| The following 303 regions match your request. |
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Matches on I
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| snR18 | guides 2'-O-methylation on large subunit rRNA at A649 and A650,B U18 snoRNA | I:142,374..142,475 (102 bp) | score=3.50 |
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| snR18 | guides 2'-O-methylation on large subunit rRNA at A649 and A650,B U18 snoRNA | I:142,374..142,475 (102 bp) | score=3.50 |
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| YAL026C | Integral membrane Ca(2+)-ATPase, potential aminophospholipid translocase required to form a specific class of secretory vesicles that accumulate upon actin cytoskeleton disruption,B mutation affects maturation of the 18S rRNA | I:95,631..99,698 (4068 bp) | score=3.11 |
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| YAL033W | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | I:82,707..83,228 (522 bp) | score=3.01 |
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Matches on II
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| YBL004W | Component of the small-subunit (SSU) processome, which is involved in the biogenesis of the 18S rRNA | II:227,639..235,120 (7482 bp) | score=3.54 |
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| YBR247C | Protein associated with U3 and U14 snoRNAs, required for pre-rRNA processing and 40S ribosomal subunit synthesis,B localized in the nucleus and concentrated in the nucleolus | II:712,999..714,450 (1452 bp) | score=3.36 |
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| snR56 | guides 2'-O-methylation on small subunit rRNA at G1427,B small nucleolar RNA snR56 | II:88,188..88,275 (88 bp) | score=3.22 |
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| snR56 | guides 2'-O-methylation on small subunit rRNA at G1427,B small nucleolar RNA snR56 | II:88,188..88,275 (88 bp) | score=3.22 |
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| snR161 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at positions 632 and 766 | II:307,185..307,345 (161 bp) | score=3.22 |
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| snR161 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at positions 632 and 766 | II:307,185..307,345 (161 bp) | score=3.22 |
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| YBL014C | Protein involved in the transcription of 35S rRNA genes by RNA polymerase I,B component of the core factor (CF) complex also composed of Rrn11p, Rrn7p and TATA-binding protein | II:199,067..201,751 (2685 bp) | score=3.12 |
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| YBL018C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | II:186,001..186,477 (477 bp) | score=3.01 |
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| YBL018C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | II:186,356..186,430 (75 bp) | score=3.01 |
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| YBR167C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | II:571,463..571,885 (423 bp) | score=3.01 |
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| YBR257W | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends,B binds to the RPR1 RNA subunit in Rnase P | II:728,880..729,719 (840 bp) | score=2.79 |
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| YBL026W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | II:170,626..171,041 (416 bp) | score=2.74 |
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| YBL026W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | II:170,680..170,807 (128 bp) | score=2.74 |
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Matches on III
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| YCR035C | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex with Rrp41p, Rrp42p, Rrp4p and Dis3p,B required for efficient maturation of 5.8S, 18S and 25S rRNA | III:191,830..193,014 (1185 bp) | score=5.28 |
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| YCR018C | Protein involved in the processing of pre-rRNA to mature rRNA,B contains a C2/C2 zinc finger motif,B srd1 mutation suppresses defects caused by the rrp1-1 mutation | III:148,236..148,901 (666 bp) | score=5.08 |
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| YCL054W | AdoMet-dependent methyltransferase involved in rRNA processing and 60S ribosomal subunit maturation,B methylates G2922 in the putative tRNA docking site of the large subunit rRNA and in the absence of snR52, U2921,B suppressor of PAB1 mutants | III:31,449..33,974 (2526 bp) | score=4.86 |
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| snR189 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 466 and of large subunit rRNA at position 2730 | III:178,606..178,794 (189 bp) | score=4.55 |
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| snR189 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 466 and of large subunit rRNA at position 2730 | III:178,606..178,794 (189 bp) | score=4.55 |
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| YCL031C | Essential protein involved in rRNA processing and ribosome biogenesis | III:64,675..65,568 (894 bp) | score=3.54 |
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| YCL059C | Essential nucleolar protein required for the synthesis of 18S rRNA and for the assembly of 40S ribosomal subunit | III:22,429..23,379 (951 bp) | score=3.47 |
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| snR65 | guides 2'-O-methylation on large subunit rRNA at U2345,B small nucleolar RNA snR65 | III:177,179..177,278 (100 bp) | score=3.47 |
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| snR65 | guides 2'-O-methylation on large subunit rRNA at U2345,B small nucleolar RNA snR65 | III:177,179..177,278 (100 bp) | score=3.47 |
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| snR43 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of large subunit rRNA at position 965 | III:107,504..107,712 (209 bp) | score=3.43 |
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| snR43 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of large subunit rRNA at position 965 | III:107,504..107,712 (209 bp) | score=3.43 |
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| snR33 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 1041 | III:142,362..142,544 (183 bp) | score=3.43 |
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| snR33 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 1041 | III:142,362..142,544 (183 bp) | score=3.43 |
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| YCR057C | Conserved 90S pre-ribosomal component essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites,B contains eight WD-repeats,B PWP2 deletion leads to defects in cell cycle and bud morphogenesis | III:220,453..223,224 (2772 bp) | score=3.17 |
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| YCR031C | Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing,B mutations confer cryptopleurine resistance,B nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins | III:177,496..178,216 (721 bp) | score=3.05 |
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| YCR031C | Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing,B mutations confer cryptopleurine resistance,B nearly identical to Rps14Bp and similar to E. coli S11 and rat S14 ribosomal proteins | III:177,903..178,209 (307 bp) | score=3.05 |
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Matches on IV
|
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| YDR365C | Nucleolar protein involved in pre-rRNA processing,B depletion causes severely decreased 18S rRNA levels | IV:1,204,488..1,206,374 (1887 bp) | score=5.45 |
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| YDR083W | Nucleolar protein involved in rRNA processing, pre-rRNA cleavage at site A2,B also involved in telomere maintenance,B mutation is synthetically lethal with a gar1 mutation | IV:612,069..613,247 (1179 bp) | score=4.86 |
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| YDL060W | Protein required for processing of 20S pre-rRNA in the cytoplasm, associates with pre-40S ribosomal particles | IV:341,619..343,985 (2367 bp) | score=3.50 |
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| YDR280W | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex | IV:1,020,742..1,021,659 (918 bp) | score=3.50 |
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| snR63 | guides 2'-O-methylation on large subunit rRNA at A2254,B small nucleolar RNA snR63 | IV:323,217..323,471 (255 bp) | score=3.47 |
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| snR63 | guides 2'-O-methylation on large subunit rRNA at A2254,B small nucleolar RNA snR63 | IV:323,217..323,471 (255 bp) | score=3.47 |
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| YDR324C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | IV:1,114,429..1,116,759 (2331 bp) | score=3.43 |
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| YDR398W | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | IV:1,267,462..1,269,393 (1932 bp) | score=3.43 |
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| YDR449C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | IV:1,357,571..1,358,893 (1323 bp) | score=3.43 |
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| snR84 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2265 | IV:1,492,468..1,493,017 (550 bp) | score=3.43 |
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| snR84 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2265 | IV:1,492,468..1,493,017 (550 bp) | score=3.43 |
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| YDR021W | Nucleolar protein required for maturation of 18S rRNA, member of the eIF4A subfamily of DEAD-box ATP-dependent RNA helicases | IV:486,800..487,999 (1200 bp) | score=3.40 |
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| YDL111C | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex with Rrp4p, Rrp41p, Rrp43p and Dis3p | IV:263,313..264,110 (798 bp) | score=3.36 |
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| YDL014W | Nucleolar protein, component of the small subunit processome complex, which is required for processing of pre-18S rRNA,B has similarity to mammalian fibrillarin | IV:427,361..428,344 (984 bp) | score=3.33 |
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| YDR413C | Hypothetical protein,B open reading frame extensively overlaps essential uncharacterized ORF YDR412W implicated in rRNA processing | IV:1,294,827..1,295,402 (576 bp) | score=3.33 |
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| YDL153C | Component of the small (ribosomal) subunit (SSU) processosome required for pre-18S rRNa processing,B essential nucleolar protein that, when overproduced, disrupts silencing | IV:181,187..183,019 (1833 bp) | score=3.30 |
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| YDL208W | Nuclear protein related to mammalian high mobility group (HMG) proteins, essential for function of H/ACA-type snoRNPs, which are involved in 18S rRNA processing | IV:87,513..87,983 (471 bp) | score=3.26 |
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| YDL148C | Nucleolar protein, forms a complex with Noc4p that mediates maturation and nuclear export of 40S ribosomal subunits,B also present in the small subunit processome complex, which is required for processing of pre-18S rRNA | IV:188,155..190,587 (2433 bp) | score=3.05 |
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| YDL213C | Protein with similarity to hydrophilins, which are involved in the adaptive response to hyperosmotic conditions,B computational analysis of large-scale protein-protein interaction data suggests a possible role in rRNA processing | IV:77,290..77,967 (678 bp) | score=2.99 |
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| YDR478W | Subunit of RNase MRP, which cleaves pre-rRNA,B not shared between Rnase MRP and nuclear Rnase P, in contrast to all other Rnase MRP protein subunits,B binds to the NME1 RNA subunit of Rnase MRP | IV:1,414,566..1,415,162 (597 bp) | score=2.81 |
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| YDR378C | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | IV:1,229,340..1,229,600 (261 bp) | score=2.74 |
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Matches on IX
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| YIL019W | Protein required for pre-rRNA processing and 40S ribosomal subunit assembly | IX:315,091..316,131 (1041 bp) | score=3.54 |
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| snR68 | guides 2'-O-methylation on large subunit rRNA at A2637,B small nucleolar RNA snR68 | IX:97,111..97,246 (136 bp) | score=3.47 |
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| snR68 | guides 2'-O-methylation on large subunit rRNA at A2637,B small nucleolar RNA snR68 | IX:97,111..97,246 (136 bp) | score=3.47 |
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| YIL104C | Essential nuclear protein, required for accumulation of box H/ACA snoRNAs and for rRNA processing,B interacts with Naf1p | IX:169,979..171,502 (1524 bp) | score=3.43 |
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| YIL133C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA,B has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins,B transcriptionally regulated by Rap1p | IX:98,527..99,416 (890 bp) | score=3.07 |
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| YIL133C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA,B has similarity to Rpl16Bp, E. coli L13 and rat L13a ribosomal proteins,B transcriptionally regulated by Rap1p | IX:99,096..99,385 (290 bp) | score=3.07 |
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Matches on Mito
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| 21S_rRNA | Mitochondrial 21S rRNA,B intron encodes the I-SceI DNA endonuclease | Mito:58,009..62,447 (4439 bp) | score=3.58 |
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| 21S_rRNA | Mitochondrial 21S rRNA,B intron encodes the I-SceI DNA endonuclease | Mito:58,009..62,447 (4439 bp) | score=3.58 |
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| 21S_rRNA | Mitochondrial 21S rRNA,B intron encodes the I-SceI DNA endonuclease | Mito:60,725..61,867 (1143 bp) | score=3.58 |
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Matches on V
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| YER127W | Essential protein involved in maturation of 18S rRNA,B depletion leads to inhibited pre-rRNA processing and reduced polysome levels,B localizes primarily to the nucleolus | V:414,477..415,550 (1074 bp) | score=5.28 |
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| snR52 | Small nucleolar RNA that guides the formation of 2'-O-methylation at position A420 of the small ribosomal subunit rRNA and U2921 of the large ribosomal subunit 35S pre-rRNA | V:431,125..431,216 (92 bp) | score=4.62 |
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| snR52 | Small nucleolar RNA that guides the formation of 2'-O-methylation at position A420 of the small ribosomal subunit rRNA and U2921 of the large ribosomal subunit 35S pre-rRNA | V:431,125..431,216 (92 bp) | score=4.62 |
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| snR80 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 775 | V:52,150..52,320 (171 bp) | score=3.47 |
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| snR80 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 775 | V:52,150..52,320 (171 bp) | score=3.47 |
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| snR67 | guides 2'-O-methylation on large subunit rRNA at G2616 and U2721,B small nucleolar RNA snR67 | V:61,352..61,433 (82 bp) | score=3.43 |
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| snR67 | guides 2'-O-methylation on large subunit rRNA at G2616 and U2721,B small nucleolar RNA snR67 | V:61,352..61,433 (82 bp) | score=3.43 |
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| YER082C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | V:324,268..325,932 (1665 bp) | score=3.43 |
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| snR53 | guides 2'-O-methylation on small subunit rRNA at A796,B small nucleolar RNA snR53 | V:61,699..61,789 (91 bp) | score=3.22 |
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| snR53 | guides 2'-O-methylation on small subunit rRNA at A796,B small nucleolar RNA snR53 | V:61,699..61,789 (91 bp) | score=3.22 |
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| YEL055C | Protein with sequence similarity to the human MybBP1A and weak sequence similar to B-type DNA polymerases, not required for chromosomal DNA replication,B required for the synthesis of rRNA | V:48,471..51,539 (3069 bp) | score=3.00 |
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| YEL026W | RNA binding protein, part of U3 snoRNP involved in rRNA processing, part of U4/U6-U5 tri-snRNP involved in mRNA splicing, similar to human 15.5K protein | V:101,943..102,323 (381 bp) | score=2.87 |
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| YER112W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | V:387,228..387,791 (564 bp) | score=2.74 |
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| YER146W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | V:462,580..462,861 (282 bp) | score=2.74 |
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Matches on VII
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| YGL136C | Mitochondrial 21S rRNA methyltransferase, required for methylation of U(2791) in 21S rRNA,B MRM2 deletion confers thermosensitive respiration and loss of mitochondrial DNA,B has similarity to Spb1p and Trm7p, and to E. coli FtsJ/RrmJ | VII:252,902..253,864 (963 bp) | score=4.98 |
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| YGL171W | ATP-dependent RNA helicase of the DEAD box family,B required for 18S rRNA synthesis | VII:182,396..184,090 (1695 bp) | score=3.54 |
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| YGR095C | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex | VII:675,675..676,346 (672 bp) | score=3.50 |
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| YGL246C | Nuclear protein that binds to and stabilizes the exoribonuclease Rat1p, required for pre-rRNA processing | VII:37,617..38,780 (1164 bp) | score=3.47 |
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| snR46 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2861 | VII:545,373..545,569 (197 bp) | score=3.43 |
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| snR46 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2861 | VII:545,373..545,569 (197 bp) | score=3.43 |
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| snR48 | guides 2'-O-methylation on large subunit rRNA at G2788 and G2790,B small nucleolar RNA snR48 | VII:609,588..609,700 (113 bp) | score=3.43 |
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| snR48 | guides 2'-O-methylation on large subunit rRNA at G2788 and G2790,B small nucleolar RNA snR48 | VII:609,588..609,700 (113 bp) | score=3.43 |
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| snR82 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2348 and 2350 | VII:316,791..317,058 (268 bp) | score=3.40 |
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| snR82 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2348 and 2350 | VII:316,791..317,058 (268 bp) | score=3.40 |
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| YGR159C | Nucleolar protein that binds nuclear localization sequences, required for pre-rRNA processing and ribosome biogenesis | VII:806,417..807,661 (1245 bp) | score=3.40 |
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| YGR128C | Nucleolar protein required for export of tRNAs from the nucleus,B also copurifies with the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | VII:747,955..750,096 (2142 bp) | score=3.30 |
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| YGR195W | 3'-to-5' phosphorolytic exoribonuclease that is a subunit of the exosome,B required for 3' processing of the 5.8S rRNA,B involved in 3' to 5' mRNA degradation and translation inhibition of non-poly(A) mRNAs | VII:888,887..889,627 (741 bp) | score=3.30 |
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| YGR103W | Nucleolar protein involved in rRNA processing and 60S ribosomal subunit biogenesis,B constituent of several different pre-ribosomal particles | VII:695,421..697,238 (1818 bp) | score=3.21 |
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| snR10 | H/ACA small nucleolar RNA (snoRNA),B essential gene required for preRNA processing for cleavage at sites A1 and A2,B guides pseudouridylation of large subunit rRNA at position 2919 | VII:345,989..346,233 (245 bp) | score=3.20 |
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| snR10 | H/ACA small nucleolar RNA (snoRNA),B essential gene required for preRNA processing for cleavage at sites A1 and A2,B guides pseudouridylation of large subunit rRNA at position 2919 | VII:345,989..346,233 (245 bp) | score=3.20 |
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| YGR034W | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins,B binds to 5.8S rRNA | VII:555,933..556,676 (744 bp) | score=3.18 |
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| YGR034W | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Ap and has similarity to E. coli L24 and rat L26 ribosomal proteins,B binds to 5.8S rRNA | VII:555,958..556,311 (354 bp) | score=3.18 |
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| YGL029W | Protein involved in nucleolar integrity and processing of the pre-rRNA for the 60S ribosome subunit,B transcript is induced in response to cytotoxic stress but not genotoxic stress | VII:440,068..440,430 (363 bp) | score=3.14 |
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| YGL232W | Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA | VII:62,075..63,002 (928 bp) | score=3.12 |
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| YGL232W | Putative tRNA acetyltransferase, RNA-binding protein required for the formation of the modified nucleoside N(4)-acetylcytidine in serine and leucine tRNAs but not required for the same modification in 18S rRNA | VII:62,132..62,189 (58 bp) | score=3.12 |
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| YGR090W | Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data | VII:662,362..666,075 (3714 bp) | score=3.08 |
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| YGR272C | Putative protein of unknown function,B deletion mutant has defects in pre-rRNA processing,B green fluorescent protein (GFP)-fusion protein localizes to the cytoplasm and nucleus | VII:1,038,048..1,038,506 (459 bp) | score=3.04 |
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| YGL236C | Mitochondrial protein, forms a heterodimer complex with Mss1p that performs the 5-carboxymethylaminomethyl modification of the wobble uridine base in mitochondrial tRNAs,B required for respiration in paromomycin-resistant 15S rRNA mutants | VII:53,787..55,796 (2010 bp) | score=3.03 |
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| YGL030W | Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein,B involved in pre-rRNA processing in the nucleolus,B autoregulates splicing of its transcript | VII:439,096..439,643 (548 bp) | score=3.01 |
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| YGL030W | Protein component of the large (60S) ribosomal subunit, has similarity to rat L30 ribosomal protein,B involved in pre-rRNA processing in the nucleolus,B autoregulates splicing of its transcript | VII:439,099..439,328 (230 bp) | score=3.01 |
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| YGR030C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | VII:545,685..546,161 (477 bp) | score=3.01 |
|---|
| YGR280C | Essential protein involved in rRNA and snoRNA maturation,B competes with TLC1 RNA for binding to Est2p, suggesting a role in regulation of telomerase,B human homolog inhibits telomerase,B contains a G-patch RNA interacting domain | VII:1,050,916..1,051,731 (816 bp) | score=3.01 |
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| YGR251W | Putative protein of unknown function,B deletion mutant has defects in pre-rRNA processing,B green fluorescent protein (GFP)-fusion protein localizes to both the nucleus and the nucleolus,B YGR251W is an essential gene | VII:995,644..996,234 (591 bp) | score=2.99 |
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| YGR214W | Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp,B required for maturation of 18S rRNA along with Rps0Bp,B deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal | VII:920,580..921,793 (1214 bp) | score=2.94 |
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| YGR214W | Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Bp,B required for maturation of 18S rRNA along with Rps0Bp,B deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal | VII:920,670..921,124 (455 bp) | score=2.94 |
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Matches on VIII
|
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| YHR065C | Protein involved in rRNA processing,B required for maturation of the 35S primary transcript of pre-rRNA and for cleavage leading to mature 18S rRNA,B homologous to eIF-4a, which is a DEAD box RNA-dependent ATPase with helicase activity | VIII:227,534..229,039 (1506 bp) | score=6.31 |
|---|
| YHR034C | Protein of unresolved function,B may function in protein folding and/or rRNA processing, interacts with a chaperone (Hsp82p), two chromatin remodeling factors (Rvb1p, Rvb2p) and two rRNA processing factors (Rrp43p, Nop58p) | VIII:176,958..177,992 (1035 bp) | score=4.50 |
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| YHR085W | Protein of unknown function, essential for viability, may be involved in rRNA processing | VIII:276,766..277,770 (1005 bp) | score=3.50 |
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| YHR089C | Protein component of the H/ACA snoRNP pseudouridylase complex, involved in the modification and cleavage of the 18S pre-rRNA | VIII:282,683..283,300 (618 bp) | score=3.47 |
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| snR71 | guides 2'-O-methylation on large subunit rRNA at A2943,B small nucleolar RNA snR71 | VIII:411,231..411,320 (90 bp) | score=3.47 |
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| snR71 | guides 2'-O-methylation on large subunit rRNA at A2943,B small nucleolar RNA snR71 | VIII:411,231..411,320 (90 bp) | score=3.47 |
|---|
| snR32 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2190 | VIII:381,543..381,730 (188 bp) | score=3.43 |
|---|
| snR32 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2190 | VIII:381,543..381,730 (188 bp) | score=3.43 |
|---|
| YHR196W | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | VIII:491,931..493,658 (1728 bp) | score=3.43 |
|---|
| YHR072W-A | Constituent of small nucleolar ribonucleoprotein particles containing H/ACA-type snoRNAs, which are required for pseudouridylation and processing of pre-18S rRNA | VIII:241,666..241,842 (177 bp) | score=3.40 |
|---|
| YHR069C | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex with Rrp41p, Rrp42p, Rrp43p and Dis3p | VIII:233,581..234,660 (1080 bp) | score=3.36 |
|---|
| YHR197W | Essential protein involved in the processing of the ITS2 region of the rRNA locus,B required for the maturation and nuclear export of the 60S ribosomal subunit | VIII:493,896..496,187 (2292 bp) | score=3.30 |
|---|
| YHR148W | Component of the SSU processome, which is required for pre-18S rRNA processing, essential protein that interacts with Mpp10p and mediates interactions of Imp4p and Mpp10p with U3 snoRNA | VIII:393,537..394,088 (552 bp) | score=3.16 |
|---|
| YHR062C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | VIII:222,879..223,760 (882 bp) | score=3.01 |
|---|
| YHL038C | Mitochondrial protein required for splicing of the group I intron aI5 of the COB pre-mRNA, binds to the RNA to promote splicing,B also involved in but not essential for splicing of the COB bI2 intron and the intron in the 21S rRNA gene | VIII:23,614..25,506 (1893 bp) | score=2.85 |
|---|
Matches on X
|
|---|
| YJL010C | Essential nucleolar protein required for 18S rRNA synthesis | X:417,478..419,478 (2001 bp) | score=3.58 |
|---|
| YJL109C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | X:211,918..217,227 (5310 bp) | score=3.43 |
|---|
| snR37 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2940 | X:228,012..228,397 (386 bp) | score=3.43 |
|---|
| snR37 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2940 | X:228,012..228,397 (386 bp) | score=3.43 |
|---|
| snR60 | guides 2'-O-methylation on large subunit rRNA at A815 and G906,B small nucleolar RNA snR60 | X:349,047..349,150 (104 bp) | score=3.43 |
|---|
| snR60 | guides 2'-O-methylation on large subunit rRNA at A815 and G906,B small nucleolar RNA snR60 | X:349,047..349,150 (104 bp) | score=3.43 |
|---|
| YJR041C | Nucleolar protein required for normal metabolism of the rRNA primary transcript, proposed to be involved in ribosome biogenesis | X:510,154..513,678 (3525 bp) | score=3.36 |
|---|
| snR3 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2128, 2132, and 2263 | X:663,664..663,858 (195 bp) | score=3.36 |
|---|
| snR3 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2128, 2132, and 2263 | X:663,664..663,858 (195 bp) | score=3.36 |
|---|
| YJL033W | Putative nucleolar DEAD box RNA helicase,B high-copy number suppression of a U14 snoRNA processing mutant suggests an involvement in 18S rRNA synthesis | X:383,754..386,066 (2313 bp) | score=3.26 |
|---|
| YJR002W | Component of the SSU processome, which is required for pre-18S rRNA processing, interacts with and controls the stability of Imp3p and Imp4p, essential for viability,B similar to human Mpp10p | X:438,780..440,561 (1782 bp) | score=3.26 |
|---|
| YJR022W | Lsm (Like Sm) protein,B forms heteroheptameric complex (with Lsm2p, Lsm3p, Lsm4p, Lsm5p, Lsm6p, and Lsm7p) that is part of spliceosomal U6 snRNP and is also implicated in processing of pre-tRNA, pre-snoRNA, and pre-rRNA | X:469,699..470,028 (330 bp) | score=3.17 |
|---|
| YJL050W | Dead-box family ATP dependent helicase required for mRNA export from the nucleus,B co-factor of the exosome complex, required for 3' end formation of 5.8S rRNA | X:342,439..345,660 (3222 bp) | score=3.16 |
|---|
| YJL025W | Protein involved in the transcription of 35S rRNA genes by RNA polymerase I,B component of the core factor (CF) complex also composed of Rrn11p, Rrn6p and TATA-binding protein | X:393,884..395,428 (1545 bp) | score=3.12 |
|---|
| YJL069C | Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data | X:310,839..312,623 (1785 bp) | score=3.08 |
|---|
| YJL191W | Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing,B mutations confer cryptopleurine resistance,B nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins | X:73,786..74,610 (825 bp) | score=3.05 |
|---|
| YJL191W | Ribosomal protein 59 of the small subunit, required for ribosome assembly and 20S pre-rRNA processing,B mutations confer cryptopleurine resistance,B nearly identical to Rps14Ap and similar to E. coli S11 and rat S14 ribosomal proteins | X:73,796..74,203 (408 bp) | score=3.05 |
|---|
| YJR145C | Protein component of the small (40S) ribosomal subunit,B mutation affects 20S pre-rRNA processing,B identical to Rps4Bp and has similarity to rat S4 ribosomal protein | X:701,943..702,984 (1042 bp) | score=3.01 |
|---|
| YJR145C | Protein component of the small (40S) ribosomal subunit,B mutation affects 20S pre-rRNA processing,B identical to Rps4Bp and has similarity to rat S4 ribosomal protein | X:702,715..702,970 (256 bp) | score=3.01 |
|---|
Matches on XI
|
|---|
| YKL078W | Predominantly nucleolar DEAH-box RNA helicase, required for 18S rRNA synthesis | XI:288,489..290,696 (2208 bp) | score=3.54 |
|---|
| snR64 | guides 2'-O-methylation on large subunit rRNA at C2335,B small nucleolar RNA snR64 | XI:38,812..38,912 (101 bp) | score=3.47 |
|---|
| snR64 | guides 2'-O-methylation on large subunit rRNA at C2335,B small nucleolar RNA snR64 | XI:38,812..38,912 (101 bp) | score=3.47 |
|---|
| snR69 | guides 2'-O-methylation on large subunit rRNA at C2945,B small nucleolar RNA snR69 | XI:364,419..364,519 (101 bp) | score=3.47 |
|---|
| snR69 | guides 2'-O-methylation on large subunit rRNA at C2945,B small nucleolar RNA snR69 | XI:364,419..364,519 (101 bp) | score=3.47 |
|---|
| YKL099C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | XI:255,364..256,116 (753 bp) | score=3.43 |
|---|
| snR42 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2971 | XI:558,658..559,008 (351 bp) | score=3.43 |
|---|
| snR42 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2971 | XI:558,658..559,008 (351 bp) | score=3.43 |
|---|
| YKL172W | Essential protein required for the maturation of 25S rRNA and 60S ribosomal subunit assembly, localizes to the nucleolus,B constituent of 66S pre-ribosomal particles | XI:125,764..127,047 (1284 bp) | score=3.18 |
|---|
| YKR060W | Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data | XI:556,160..556,984 (825 bp) | score=3.08 |
|---|
| YKR081C | Essential protein involved in the processing of pre-rRNA and the assembly of the 60S ribosomal subunit,B interacts with ribosomal protein L11,B localizes predominantly to the nucleolus,B constituent of 66S pre-ribosomal particles | XI:591,148..592,182 (1035 bp) | score=2.92 |
|---|
Matches on XII
|
|---|
| snR30 | H/ACA small nucleolar RNA (snoRNA),B required for cleavage of 35S pre-rRNA at sites A1 and A2 to form mature 18S rRNA | XII:198,785..199,385 (601 bp) | score=5.45 |
|---|
| snR30 | H/ACA small nucleolar RNA (snoRNA),B required for cleavage of 35S pre-rRNA at sites A1 and A2 to form mature 18S rRNA | XII:198,785..199,385 (601 bp) | score=5.45 |
|---|
| YLR068W | Protein of unknown function, required for survival upon exposure to K1 killer toxin,B involved in processing the 35S rRNA primary transcript to generate the 20S and 27SA2 pre-rRNA transcripts | XII:271,009..271,464 (456 bp) | score=5.24 |
|---|
| ETS1-1 | Non-coding region, located immediately upstream of RDN18, that is transcribed as part of the 35S rRNA precursor transcript,B contains an essential U3 snoRNA binding site required for maturation of 18S rRNA | XII:457,734..458,433 (700 bp) | score=5.21 |
|---|
| ETS1-1 | Non-coding region, located immediately upstream of RDN18, that is transcribed as part of the 35S rRNA precursor transcript,B contains an essential U3 snoRNA binding site required for maturation of 18S rRNA | XII:457,734..458,433 (700 bp) | score=5.21 |
|---|
| ETS1-2 | Non-coding region located immediately upstream of RDN18, transcribed as part of the 35S rRNA precursor transcript,B contains an essential U3 snoRNA binding site required for maturation of 18S rRNA | XII:466,871..467,570 (700 bp) | score=5.21 |
|---|
| ETS1-2 | Non-coding region located immediately upstream of RDN18, transcribed as part of the 35S rRNA precursor transcript,B contains an essential U3 snoRNA binding site required for maturation of 18S rRNA | XII:466,871..467,570 (700 bp) | score=5.21 |
|---|
| YLR129W | Nucleolar protein, specifically associated with the U3 snoRNA, part of the large ribonucleoprotein complex known as the small subunit (SSU) processome, required for 18S rRNA biogenesis, part of the active pre-rRNA processing complex | XII:399,658..402,489 (2832 bp) | score=4.84 |
|---|
| ETS2-1 | Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B contains the primary rRNA transcription termination site at +93 and a secondary termination site between +211 and +250 | XII:451,576..451,786 (211 bp) | score=4.84 |
|---|
| ETS2-1 | Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B contains the primary rRNA transcription termination site at +93 and a secondary termination site between +211 and +250 | XII:451,576..451,786 (211 bp) | score=4.84 |
|---|
| YLR192C | Dual function protein involved in translation initiation as a substoichiometric component of eukaryotic translation initiation factor 3 (eIF3) and required for processing of 20S pre-rRNA,B binds to eIF3 subunits Rpg1p and Prt1p and 18S rRNA | XII:538,794..539,591 (798 bp) | score=4.65 |
|---|
| snR44 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 106 and of large subunit rRNA at position 1055 | XII:856,709..856,919 (211 bp) | score=4.55 |
|---|
| snR44 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 106 and of large subunit rRNA at position 1055 | XII:856,709..856,919 (211 bp) | score=4.55 |
|---|
| ETS2-2 | Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B contains the primary rRNA transcription termination site at +93 and a secondary termination site between +211 and +250,B Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of ITS1 (internal transcribed spacer 1) | XII:460,713..460,923 (211 bp) | score=4.40 |
|---|
| ETS2-2 | Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B contains the primary rRNA transcription termination site at +93 and a secondary termination site between +211 and +250,B Non-coding region located adjacent to and downstream of RDN25, transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of ITS1 (internal transcribed spacer 1) | XII:460,713..460,923 (211 bp) | score=4.40 |
|---|
| YLR435W | Protein with a potential role in pre-rRNA processing | XII:1,006,375..1,006,992 (618 bp) | score=3.62 |
|---|
| YLR154W-B | Identified by fungal homology and RT-PCR,B encoded within the the 25S rRNA gene on the opposite strand | XII:454,393..454,557 (165 bp) | score=3.50 |
|---|
| snR61 | guides 2'-O-methylation on large subunit rRNA at A1131,B small nucleolar RNA snR61 | XII:794,486..794,575 (90 bp) | score=3.47 |
|---|
| snR61 | guides 2'-O-methylation on large subunit rRNA at A1131,B small nucleolar RNA snR61 | XII:794,486..794,575 (90 bp) | score=3.47 |
|---|
| YLR154W-F | Identified by expression profiling and mass spectrometry,B encoded within the the 35S rRNA transcript on the opposite strand | XII:455,884..456,024 (141 bp) | score=3.43 |
|---|
| YLR222C | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | XII:579,320..581,773 (2454 bp) | score=3.43 |
|---|
| snR34 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2876 and 2822 | XII:898,987..899,536 (550 bp) | score=3.40 |
|---|
| snR34 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2876 and 2822 | XII:898,987..899,536 (550 bp) | score=3.40 |
|---|
| YLR196W | Protein with WD-40 repeats involved in rRNA processing,B associates with trans-acting ribosome biogenesis factors,B similar to beta-transducin superfamily | XII:543,970..545,700 (1731 bp) | score=3.26 |
|---|
| YLR154W-E | Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching,B encoded within the the 35S rRNA transcript on the opposite strand | XII:455,434..455,637 (204 bp) | score=3.23 |
|---|
| YLR186W | Protein required for the maturation of the 18S rRNA and for 40S ribosome production,B associated with spindle/microtubules,B nuclear localization depends on physical interaction with Nop14p,B may bind snoRNAs | XII:523,634..524,392 (759 bp) | score=3.23 |
|---|
| YLR197W | Essential evolutionarily-conserved nucleolar protein component of the box C/D snoRNP complexes that direct 2'-O-methylation of pre-rRNA during its maturation,B overexpression causes spindle orientation defects | XII:546,099..547,613 (1515 bp) | score=3.23 |
|---|
| YLR165C | Pseudouridine synthase, catalyzes only the formation of pseudouridine (Psi)-2819 in mitochondrial 21S rRNA,B not essential for viability | XII:494,496..495,260 (765 bp) | score=3.22 |
|---|
| snR55 | guides 2'-O-methylation on small subunit rRNA at U1267,B small nucleolar RNA snR55 | XII:794,697..794,794 (98 bp) | score=3.22 |
|---|
| snR55 | guides 2'-O-methylation on small subunit rRNA at U1267,B small nucleolar RNA snR55 | XII:794,697..794,794 (98 bp) | score=3.22 |
|---|
| snR57 | guides 2'-O-methylation on small subunit rRNA at G1571,B small nucleolar RNA snR57 | XII:794,937..795,024 (88 bp) | score=3.22 |
|---|
| snR57 | guides 2'-O-methylation on small subunit rRNA at G1571,B small nucleolar RNA snR57 | XII:794,937..795,024 (88 bp) | score=3.22 |
|---|
| YLR344W | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Bp and has similarity to E. coli L24 and rat L26 ribosomal proteins,B binds to 5.8S rRNA | XII:819,312..820,142 (831 bp) | score=3.18 |
|---|
| YLR344W | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl26Bp and has similarity to E. coli L24 and rat L26 ribosomal proteins,B binds to 5.8S rRNA | XII:819,331..819,777 (447 bp) | score=3.18 |
|---|
| YLR175W | Component of box H/ACA small nucleolar ribonucleoprotein particles (snoRNPs), probable rRNA pseudouridine synthase, binds to snoRNP Nop10p and also interacts with ribosomal biogenesis protein Nop53p | XII:506,136..507,587 (1452 bp) | score=3.17 |
|---|
| YLL035W | Protein of unknown function, required for cell growth and possibly involved in rRNA processing,B mRNA is cell cycle regulated | XII:68,579..70,477 (1899 bp) | score=3.16 |
|---|
| YLR154W-A | Identified by gene-trapping, microarray-based expression analysis, and genome-wide homology searching,B encoded within the the 25S rRNA gene on the opposite strand | XII:452,439..452,624 (186 bp) | score=3.12 |
|---|
| YLR154W-C | Mitochondrial protein of unknown function, overexpression suppresses an rpo41 mutation affecting mitochondrial RNA polymerase,B encoded within the 25S rRNA gene on the opposite strand | XII:454,697..455,071 (375 bp) | score=3.12 |
|---|
| YLR409C | Possible U3 snoRNP protein involved in maturation of pre-18S rRNA, based on computational analysis of large-scale protein-protein interaction data | XII:934,412..937,231 (2820 bp) | score=3.08 |
|---|
| YLR029C | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Bp and has similarity to rat L15 ribosomal protein,B binds to 5.8 S rRNA | XII:201,977..202,591 (615 bp) | score=3.01 |
|---|
| YLR448W | Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein,B binds to 5.8S rRNA | XII:1,028,850..1,029,764 (915 bp) | score=3.00 |
|---|
| YLR448W | Protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein,B binds to 5.8S rRNA | XII:1,028,865..1,029,248 (384 bp) | score=3.00 |
|---|
| ITS2-1 | Non-coding region, between RDN58 and RDN25, that is transcribed as part of the 35S rRNA precursor transcript,B forms a stem-loop structure that is required for processing of the precursor transcript | XII:455,183..455,414 (232 bp) | score=2.99 |
|---|
| ITS2-1 | Non-coding region, between RDN58 and RDN25, that is transcribed as part of the 35S rRNA precursor transcript,B forms a stem-loop structure that is required for processing of the precursor transcript | XII:455,183..455,414 (232 bp) | score=2.99 |
|---|
| ITS2-2 | Non-coding region between RDN58 and RDN25, transcribed as part of the 35S rRNA precursor transcript,B forms a stem-loop structure required for processing of the precursor transcript | XII:464,320..464,551 (232 bp) | score=2.99 |
|---|
| ITS2-2 | Non-coding region between RDN58 and RDN25, transcribed as part of the 35S rRNA precursor transcript,B forms a stem-loop structure required for processing of the precursor transcript | XII:464,320..464,551 (232 bp) | score=2.99 |
|---|
| ITS1-2 | Non-coding region between RDN58 and RDN18, transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of the 3' external transcribed spacer (3' ETS) | XII:464,710..465,070 (361 bp) | score=2.99 |
|---|
| ITS1-2 | Non-coding region between RDN58 and RDN18, transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of the 3' external transcribed spacer (3' ETS) | XII:464,710..465,070 (361 bp) | score=2.99 |
|---|
| ITS1-1 | Non-coding region, between RDN58 and RDN18, that is transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of the 3' external transcribed spacer (3'ETS) | XII:455,573..455,933 (361 bp) | score=2.97 |
|---|
| ITS1-1 | Non-coding region, between RDN58 and RDN18, that is transcribed as part of the 35S rRNA precursor transcript,B excision during transcript maturation is coupled with processing of the 3' external transcribed spacer (3'ETS) | XII:455,573..455,933 (361 bp) | score=2.97 |
|---|
| YLR039C | Protein involved in retrograde transport to the cis-Golgi network,B forms heterodimer with Rgp1p that acts as a GTP exchange factor for Ypt6p,B involved in transcription of rRNA and ribosomal protein genes | XII:225,427..228,597 (3171 bp) | score=2.96 |
|---|
| YLR048W | Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap,B required for maturation of 18S rRNA along with Rps0Ap,B deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal | XII:242,233..243,350 (1118 bp) | score=2.94 |
|---|
| YLR048W | Protein component of the small (40S) ribosomal subunit, nearly identical to Rps0Ap,B required for maturation of 18S rRNA along with Rps0Ap,B deletion of either RPS0 gene reduces growth rate, deletion of both genes is lethal | XII:242,323..242,681 (359 bp) | score=2.94 |
|---|
| YLR059C | RNA exonuclease, required for U4 snRNA maturation,B functions redundantly with Rnh70p in 5.8S rRNA maturation, and with Rnh70p and Rex3p in processing of U5 snRNA and RNase P RNA,B member of RNase D family of exonucleases | XII:259,739..260,548 (810 bp) | score=2.75 |
|---|
| YLR438C-A | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | XII:1,013,906..1,014,175 (270 bp) | score=2.74 |
|---|
Matches on XIII
|
|---|
| YMR229C | Protein required for the synthesis of both 18S and 5.8S rRNA,B C-terminal region is crucial for the formation of 18S rRNA and N-terminal region is required for the 5.8S rRNA,B component of small ribosomal subunit (SSU) processosome | XIII:725,933..731,122 (5190 bp) | score=5.61 |
|---|
| YMR285C | Protein involved in 5.8S rRNA processing,B Ccr4p-like RNase required for correct 3'-end formation of 5.8S rRNA at site E,B similar to Ngl1p and Ngl3p | XIII:840,143..841,690 (1548 bp) | score=5.35 |
|---|
| snR83 | H/ACA snoRNA,B guides pseudouridylation of small subunit rRNA at position 1289 | XIII:626,348..626,653 (306 bp) | score=3.50 |
|---|
| snR83 | H/ACA snoRNA,B guides pseudouridylation of small subunit rRNA at position 1289 | XIII:626,348..626,653 (306 bp) | score=3.50 |
|---|
| YML093W | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | XIII:83,090..85,789 (2700 bp) | score=3.43 |
|---|
| YMR093W | Nucleolar protein, component of the small subunit (SSU) processome containing the U3 snoRNA that is involved in processing of pre-18S rRNA | XIII:454,014..455,555 (1542 bp) | score=3.43 |
|---|
| snR24 | guides 2'-O-methylation on large subunit rRNA at C1437, A1449, and G1450,B small nucleolar RNA U24 | XIII:499,983..500,071 (89 bp) | score=3.43 |
|---|
| snR24 | guides 2'-O-methylation on large subunit rRNA at C1437, A1449, and G1450,B small nucleolar RNA U24 | XIII:499,983..500,071 (89 bp) | score=3.43 |
|---|
| snR11 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2415 | XIII:652,274..652,531 (258 bp) | score=3.43 |
|---|
| snR11 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2415 | XIII:652,274..652,531 (258 bp) | score=3.43 |
|---|
| YMR128W | Essential DEAH-box ATP-dependent RNA helicase specific to the U3 snoRNP, predominantly nucleolar in distribution, required for 18S rRNA synthesis | XIII:523,695..527,498 (3804 bp) | score=3.36 |
|---|
| snR54 | guides 2'-O-methylation on small subunit rRNA at A973,B small nucleolar RNA snR54 | XIII:163,535..163,620 (86 bp) | score=3.22 |
|---|
| snR54 | guides 2'-O-methylation on small subunit rRNA at A973,B small nucleolar RNA snR54 | XIII:163,535..163,620 (86 bp) | score=3.22 |
|---|
| snR85 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of small subunit rRNA at position 1179 | XIII:67,768..67,938 (171 bp) | score=3.21 |
|---|
| snR85 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of small subunit rRNA at position 1179 | XIII:67,768..67,938 (171 bp) | score=3.21 |
|---|
| YML127W | One of 15 subunits of the 'Remodel the Structure of Chromatin' (RSC) complex,B DNA-binding protein involved in the synthesis of rRNA and in transcriptional repression and activation of genes regulated by the Target of Rapamycin (TOR) pathway | XIII:17,065..18,810 (1746 bp) | score=3.17 |
|---|
| YML073C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein,B binds to 5.8S rRNA | XIII:123,227..124,172 (946 bp) | score=3.02 |
|---|
| YML073C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, has similarity to Rpl6Bp and to rat L6 ribosomal protein,B binds to 5.8S rRNA | XIII:123,743..124,157 (415 bp) | score=3.02 |
|---|
| YMR121C | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl15Ap and has similarity to rat L15 ribosomal protein,B binds to 5.8 S rRNA | XIII:509,733..510,347 (615 bp) | score=3.01 |
|---|
| YMR194W | N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein,B binds to 5.8 S rRNA | XIII:651,144..651,909 (766 bp) | score=3.01 |
|---|
| YMR194W | N-terminally acetylated protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Bp and has similarity to rat L36 ribosomal protein,B binds to 5.8 S rRNA | XIII:651,160..651,622 (463 bp) | score=3.01 |
|---|
Matches on XIV
|
|---|
| YNL207W | Essential serine kinase involved in the processing of the 20S pre-rRNA into mature 18S rRNA,B has similarity to Rio1p | XIV:255,354..256,631 (1278 bp) | score=5.45 |
|---|
| snR49 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at positions 120, 211, and 302 and of large subunit rRNA at position 989 | XIV:716,122..716,286 (165 bp) | score=4.81 |
|---|
| snR49 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at positions 120, 211, and 302 and of large subunit rRNA at position 989 | XIV:716,122..716,286 (165 bp) | score=4.81 |
|---|
| NME1 | RNA component of RNase MRP, which cleaves pre-rRNA | XIV:585,588..585,927 (340 bp) | score=3.66 |
|---|
| snR66 | guides 2'-O-methylation on large subunit rRNA at U2415,B small nucleolar RNA snR66 | XIV:586,091..586,176 (86 bp) | score=3.47 |
|---|
| snR66 | guides 2'-O-methylation on large subunit rRNA at U2415,B small nucleolar RNA snR66 | XIV:586,091..586,176 (86 bp) | score=3.47 |
|---|
| YNL175C | Protein of unknown function, localizes to the nucleolus and nucleoplasm,B contains an RNA recognition motif (RRM) and has similarity to Nop12p, which is required for processing of pre-18S rRNA | XIV:307,403..308,614 (1212 bp) | score=3.33 |
|---|
| YNL112W | Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing | XIV:413,641..416,283 (2643 bp) | score=3.33 |
|---|
| YNL112W | Essential ATP-dependent RNA helicase of the DEAD-box protein family, involved in nonsense-mediated mRNA decay and rRNA processing | XIV:414,914..415,915 (1002 bp) | score=3.33 |
|---|
| YNL075W | Component of the SSU processome, which is required for pre-18S rRNA processing,B interacts with Mpp10p,B member of a superfamily of proteins that contain a sigma(70)-like motif and associate with RNAs | XIV:485,608..486,480 (873 bp) | score=3.30 |
|---|
| snR191 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2259 and 2257,B encoded within the intron of NOG2/YNR053C | XIV:721,939..722,212 (274 bp) | score=3.26 |
|---|
| snR191 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 2259 and 2257,B encoded within the intron of NOG2/YNR053C | XIV:721,939..722,212 (274 bp) | score=3.26 |
|---|
| YNR054C | Essential nucleolar protein involved in pre-18S rRNA processing,B component of the small subunit (SSU) processome,B has sequence similarity to mABT1, a mouse transcription activator | XIV:723,357..724,307 (951 bp) | score=3.23 |
|---|
| YNL124W | Protein required for the assembly of box H/ACA snoRNPs and for pre-rRNA processing, forms a complex with Shq1p and interacts with H/ACA snoRNP components Nhp2p and Cbf5p,B has similarity to Gar1p and other RNA-binding proteins | XIV:392,894..394,372 (1479 bp) | score=3.17 |
|---|
| YNL061W | Probable RNA m(5)C methyltransferase, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis,B localized to the nucleolus,B constituent of 66S pre-ribosomal particles | XIV:510,541..512,397 (1857 bp) | score=3.14 |
|---|
| YNL039W | Essential subunit of RNA polymerase III transcription factor (TFIIIB), which is involved in transcription of genes encoding tRNAs, 5S rRNA, U6 snRNA, and other small RNAs | XIV:555,049..556,833 (1785 bp) | score=3.14 |
|---|
| YNL069C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA,B has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins,B transcriptionally regulated by Rap1p | XIV:493,957..495,002 (1046 bp) | score=3.07 |
|---|
| YNL069C | N-terminally acetylated protein component of the large (60S) ribosomal subunit, binds to 5.8 S rRNA,B has similarity to Rpl16Ap, E. coli L13 and rat L13a ribosomal proteins,B transcriptionally regulated by Rap1p | XIV:494,526..494,974 (449 bp) | score=3.07 |
|---|
| YNL282W | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends | XIV:107,687..108,274 (588 bp) | score=3.01 |
|---|
| YNL221C | Subunit of both RNase MRP, which cleaves pre-rRNA, and nuclear RNase P, which cleaves tRNA precursors to generate mature 5' ends,B binds to the RPR1 RNA subunit in Rnase P | XIV:231,069..233,696 (2628 bp) | score=2.79 |
|---|
| YNL147W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | XIV:350,942..351,385 (444 bp) | score=2.74 |
|---|
| YNL147W | Lsm (Like Sm) protein,B part of heteroheptameric complexes (Lsm2p-7p and either Lsm1p or 8p): cytoplasmic Lsm1p complex involved in mRNA decay,B nuclear Lsm8p complex part of U6 snRNP and possibly involved in processing tRNA, snoRNA, and rRNA | XIV:350,960..351,079 (120 bp) | score=2.74 |
|---|
Matches on XV
|
|---|
| YOR310C | Protein involved in pre-rRNA processing, 18S rRNA synthesis, and snoRNA synthesis,B component of the small subunit processome complex, which is required for processing of pre-18S rRNA | XV:896,822..898,357 (1536 bp) | score=5.85 |
|---|
| YOR119C | Essential serine kinase involved in cell cycle progression and processing of the 20S pre-rRNA into mature 18S rRNA | XV:548,793..550,247 (1455 bp) | score=5.43 |
|---|
| YOR056C | Essential nuclear protein involved in proteasome maturation and synthesis of 40S ribosomal subunits,B required for cleavage of the 20S pre-rRNA to generate the mature 18S rRNA | XV:430,249..431,628 (1380 bp) | score=5.32 |
|---|
| YOR145C | Essential nucleolar protein required for pre-18S rRNA processing, interacts with Dim1p, an 18S rRNA dimethyltransferase, and also with Nob1p, which is involved in proteasome biogenesis,B contains a KH domain | XV:605,348..606,172 (825 bp) | score=5.32 |
|---|
| YOL127W | Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins,B binds to 26S rRNA via a conserved C-terminal motif | XV:80,348..81,190 (843 bp) | score=4.92 |
|---|
| YOL127W | Primary rRNA-binding ribosomal protein component of the large (60S) ribosomal subunit, has similarity to E. coli L23 and rat L23a ribosomal proteins,B binds to 26S rRNA via a conserved C-terminal motif | XV:80,361..80,774 (414 bp) | score=4.92 |
|---|
| YOL142W | Protein involved in rRNA processing,B component of the exosome 3-,E5 exonuclease complex | XV:55,557..56,279 (723 bp) | score=3.50 |
|---|
| YOL080C | Putative RNA exonuclease possibly involved in pre-rRNA processing and ribosome assembly | XV:180,558..181,427 (870 bp) | score=3.50 |
|---|
| snR50 | guides 2'-O-methylation on large subunit rRNA at G865,B small nucleolar RNA snR50 | XV:259,490..259,579 (90 bp) | score=3.47 |
|---|
| snR50 | guides 2'-O-methylation on large subunit rRNA at G865,B small nucleolar RNA snR50 | XV:259,490..259,579 (90 bp) | score=3.47 |
|---|
| snR62 | guides 2'-O-methylation on large subunit rRNA at U1886,B small nucleolar RNA snR62 | XV:409,765..409,864 (100 bp) | score=3.47 |
|---|
| snR62 | guides 2'-O-methylation on large subunit rRNA at U1886,B small nucleolar RNA snR62 | XV:409,765..409,864 (100 bp) | score=3.47 |
|---|
| YOR201C | Ribose methyltransferase that modifies a functionally critical, conserved nucleotide in mitochondrial 21S rRNA | XV:720,471..721,709 (1239 bp) | score=3.47 |
|---|
| snR8 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 985 and 959 | XV:832,331..832,520 (190 bp) | score=3.47 |
|---|
| snR8 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 985 and 959 | XV:832,331..832,520 (190 bp) | score=3.47 |
|---|
| snR81 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 1051 | XV:234,345..234,545 (201 bp) | score=3.43 |
|---|
| snR81 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 1051 | XV:234,345..234,545 (201 bp) | score=3.43 |
|---|
| snR9 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2339 | XV:407,948..408,134 (187 bp) | score=3.43 |
|---|
| snR9 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at position 2339 | XV:407,948..408,134 (187 bp) | score=3.43 |
|---|
| snR5 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 1003 and 1123 | XV:842,402..842,605 (204 bp) | score=3.40 |
|---|
| snR5 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of large subunit rRNA at positions 1003 and 1123 | XV:842,402..842,605 (204 bp) | score=3.40 |
|---|
| YOR146W | Hypothetical protein,B open reading frame overlaps 5' end of essential PNO1 gene required for pre-18S rRNA processing | XV:605,874..606,179 (306 bp) | score=3.36 |
|---|
| YOR048C | Nuclear 5' to 3' single-stranded RNA exonuclease, involved in RNA metabolism, including rRNA and snRNA processing as well as mRNA transcription termination | XV:418,631..421,651 (3021 bp) | score=3.33 |
|---|
| YOL041C | Nucleolar protein, required for pre-25S rRNA processing,B contains an RNA recognition motif (RRM) and has similarity to Nop13p, Nsr1p, and putative orthologs in Drosophila and S. pombe | XV:251,266..252,645 (1380 bp) | score=3.30 |
|---|
| snR36 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 1185 | XV:680,643..680,997 (355 bp) | score=3.22 |
|---|
| snR36 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 1185 | XV:680,643..680,997 (355 bp) | score=3.22 |
|---|
| snR31 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 1000 | XV:841,957..842,181 (225 bp) | score=3.22 |
|---|
| snR31 | H/ACA small nucleolar RNA (snoRNA),B guides pseudouridylation of small subunit rRNA at position 1000 | XV:841,957..842,181 (225 bp) | score=3.22 |
|---|
| snR35 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of small subunit rRNA at position 1189 | XV:759,191..759,730 (540 bp) | score=3.21 |
|---|
| snR35 | H/ACA small nucleolar RNA (snoRNA),B predicted to guide pseudouridylation of small subunit rRNA at position 1189 | XV:759,191..759,730 (540 bp) | score=3.21 |
|---|
| YOL010W | RNA terminal phosphate cyclase-like protein involved in rRNA processing at sites A0, A1, and A2,B does not possess detectable RNA cyclase activity | XV:307,939..309,042 (1104 bp) | score=3.20 |
|---|
| YOL077C | Nucleolar protein, constituent of 66S pre-ribosomal particles,B depletion leads to defects in rRNA processing and a block in the assembly of large ribosomal subunits,B possesses a sigma(70)-like RNA-binding motif | XV:185,848..186,723 (876 bp) | score=3.05 |
|---|
| YOL021C | Nucleolar exosome component, involved in rRNA processing and RNA degradation, binds Gsp1p/Ran and enhances the GEF activity of Srm1p, implicated in mitotic control, homologous to the E. coli RNase R of the RNase II family | XV:282,422..285,427 (3006 bp) | score=3.03 |
|---|
| YOL115W | Catalytic subunit of TRAMP (Trf4/Pap2p-Mtr4p-Air1p/2p), a nuclear poly (A) polymerase complex involved in RNA quality control,B catalyzes polyadenylation of unmodified tRNAs, and snoRNA and rRNA precursors,B disputed role as a DNA polymerase | XV:101,475..103,229 (1755 bp) | score=2.94 |
|---|
Matches on XVI
|
|---|
| YPR143W | Nucleolar protein, constituent of pre-60S ribosomal particles,B required for processing of the 27S pre-rRNA at the A2 site to yield 5.8S and 25S rRNA | XVI:818,319..819,071 (753 bp) | score=5.43 |
|---|
| YPL266W | Essential 18S rRNA dimethylase, responsible for conserved m6(2)Am6(2)A dimethylation in 3'-terminal loop of 18 S rRNA, part of 90S and 40S pre-particles in nucleolus, involved in pre-ribosomal RNA processing | XVI:39,121..40,077 (957 bp) | score=5.32 |
|---|
| snR51 | guides 2'-O-methylation on small subunit rRNA at A100 and on large subunit rRNA at U2726,B small nucleolar RNA snR51 | XVI:718,698..718,804 (107 bp) | score=4.81 |
|---|
| snR51 | guides 2'-O-methylation on small subunit rRNA at A100 and on large subunit rRNA at U2726,B small nucleolar RNA snR51 | XVI:718,698..718,804 (107 bp) | score=4.81 |
|---|
| YPR104C | Putative transcriptional regulator with similarity to DNA-binding domain of Drosophila forkhead,B required for rRNA processing | XVI:733,621..736,431 (2811 bp) | score=3.40 |
|---|
| YPL126W | U3 snoRNP protein, component of the small (ribosomal) subunit (SSU) processosome containing U3 snoRNA,B required for the biogenesis of18S rRNA | XVI:310,209..312,899 (2691 bp) | score=3.36 |
|---|
| YPL217C | Essential conserved nucleolar GTP-binding protein required for synthesis of 40S ribosomal subunits and for processing of the 35S pre-rRNA at sites A0, A1, and A2,B interacts with Rcl1p, has similarity to Tsr1p | XVI:139,619..143,170 (3552 bp) | score=3.23 |
|---|
| YPL021W | Non-essential protein of unconfirmed function,B affects pre-rRNA processing, may act as a negative regulator of the transcription of genes involved in pseudohyphal growth,B homologous to Srd1p | XVI:511,099..511,662 (564 bp) | score=3.23 |
|---|
| snR70 | involved in 2'-O-methylation on small subunit rRNA at C1638,B small nucleolar RNA snR70 | XVI:718,885..719,049 (165 bp) | score=3.22 |
|---|
| snR70 | involved in 2'-O-methylation on small subunit rRNA at C1638,B small nucleolar RNA snR70 | XVI:718,885..719,049 (165 bp) | score=3.22 |
|---|
| YPR137W | Protein involved in pre-rRNA processing, associated with U3 snRNP,B component of small ribosomal subunit (SSU) processosome,B ortholog of the human U3-55k protein | XVI:802,355..804,076 (1722 bp) | score=3.18 |
|---|
| YPL146C | Nucleolar protein,B involved in biogenesis of the 60S subunit of the ribosome,B interacts with rRNA processing factors Cbf5p and Nop2p,B null mutant is viable but growth is severely impaired | XVI:276,161..277,528 (1368 bp) | score=3.17 |
|---|
| YPR112C | Essential conserved protein that associates with 35S precursor rRNA and is required for its initial processing at the A(0)-A(2) cleavage sites, shows partial nucleolar localization, contains five consensus RNA-binding domains | XVI:749,254..751,917 (2664 bp) | score=3.17 |
|---|
| YPL043W | Nucleolar protein, essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis,B constituent of 66S pre-ribosomal particles,B contains four RNA recognition motifs (RRMs) | XVI:469,936..471,993 (2058 bp) | score=3.12 |
|---|
| YPL249C-A | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein,B binds to 5.8 S rRNA | XVI:75,699..76,239 (541 bp) | score=3.01 |
|---|
| YPL249C-A | Protein component of the large (60S) ribosomal subunit, nearly identical to Rpl36Ap and has similarity to rat L36 ribosomal protein,B binds to 5.8 S rRNA | XVI:75,986..76,223 (238 bp) | score=3.01 |
|---|
| YPL131W | Protein component of the large (60S) ribosomal subunit with similarity to E. coli L18 and rat L5 ribosomal proteins,B binds 5S rRNA and is required for 60S subunit assembly | XVI:303,120..304,013 (894 bp) | score=3.01 |
|---|
| YPR186C | Transcription factor IIIA (TFIIIA), essential protein with nine C2H2 Zn-fingers, binds the 5S rRNA gene through the zinc finger domain and directs assembly of a multiprotein initiation complex for RNA polymerase III,B also binds DNA | XVI:909,729..911,018 (1290 bp) | score=3.01 |
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